Difference between revisions of "Main Page"

From Enigma-Dev
Jump to: navigation, search
Recently Changed Pages
Recent Contributors
Highest Contributors
(→‎Recently Contributed Datasets)
 
(235 intermediate revisions by 5 users not shown)
Line 1: Line 1:
  
 
= Welcome to the ENIGMA Organic Data Science wiki! =
 
= Welcome to the ENIGMA Organic Data Science wiki! =
 +
[[File:Enigmalogo.JPG|center|350px|alt=ENIGMALogo]]
 +
 
This is a demonstration prototype for the [http://www.organicdatascience.org Organic Data Science] wiki for the [http://enigma.usc.edu ENIGMA collaboration].   
 
This is a demonstration prototype for the [http://www.organicdatascience.org Organic Data Science] wiki for the [http://enigma.usc.edu ENIGMA collaboration].   
  
Line 6: Line 8:
  
 
For any questions or to get an account on this wiki, please contact us at <b>organic.data.science@gmail.com</b>.
 
For any questions or to get an account on this wiki, please contact us at <b>organic.data.science@gmail.com</b>.
 +
 +
Example query to get all Datasets, Project and Cohort
 +
{{#ask:
 +
[[Category:Cohort (E)]]
 +
[[HasEthnicGroup (E)::+]]
 +
|?HasEthnicGroup (E)=Ancestry
 +
|mainlabel=Cohort
 +
|format=broadtable
 +
|limit=20
 +
}}
 +
 +
=Working Groups=
 +
Here are some of the Working Groups in the ENIGMA Consortium. There are a total of '''{{PAGESINCATEGORY:WorkingGroup (E)}} working groups''' in the consortium.
 +
 +
<gallery mode = "packed-overlay" widths=250px heights=200px>
 +
File:AddictionAlcohol medial.png | [[Addiction_WG | Addiction]]
 +
File:ADHD medial.png | [[ADHD_WG | ADHD]]
 +
File:BipolarDisorder medial.png | [[BD_WG | Bipolar Disorder]]
 +
File:DepressionMDD medial.png | [[Depression_WG | Depression]]
 +
File:OCD medial.png | [[OCD_WG | OCD]]
 +
File:Schizophrenia medial.png | [[Schizophrenia_WG | Schizophrenia]]
 +
</gallery>
  
 
The <b>[[ENIGMA WIKI OVERVIEW TABLES]]</b> give an overview of all working groups, projects, people, and cohort data available in ENIGMA collaboration.
 
The <b>[[ENIGMA WIKI OVERVIEW TABLES]]</b> give an overview of all working groups, projects, people, and cohort data available in ENIGMA collaboration.
  
−
=== Cheat Sheet for the ENIGMA Wiki ===
+
=<b>Before you start</b>: About ODS and the Semantic Media Wiki=
−
<b>[[ENIGMA Wiki Demonstration]]</b>
+
 
 +
Anyone can edit this wiki to add information about their own site, their participation in ENIGMA Working Groups, and the status of their work.  Before you can make edits you will be asked to go through a training session for semantic wikis, since this is a special wiki that has semantic annotations and reasoning.  You can also go through the documentation [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here]
 +
 
 +
To learn the basics of how wikis work, consult our [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the official [//meta.wikimedia.org/wiki/Help:Contents User's Guide].
 +
 
 +
Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
 +
 
 +
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
 +
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
 +
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 +
* [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
 +
 
 +
=Getting Started=
 +
Here you can find instructions on contributing to the Wiki, creating your own workflows with WINGS, and testing your hypotheses through DISK.
 +
 
 +
<gallery mode = "packed-overlay" widths=200px heights=200px>
 +
File:Enigma-wiki.JPG | [[ENIGMA_Wiki_Demonstration | ENIGMA Wiki Demo]]
 +
File:Wings-logo.JPG | [[WINGS_Workflow_Documentation | WINGS doc]]
 +
File:DISK-logo.JPG | [[DISK_Documentation | DISK doc]]
 +
</gallery>
 +
 
 +
=Organizations=
 +
Here are some of the organizations participating in the ENIGMA Project.
 +
 
 +
{{#ask:
 +
[[Category:Organization_(E)]]
 +
|?IsPartOfOrganization (E)=Part Of
 +
|?hasAffiliate (E)=Affiliate
 +
|format=broadtable
 +
|limit=10
 +
}}
 +
 
 +
{{#ask:
 +
[[Category:Organization_(E)]]
 +
|?HasCoordinates (E)
 +
| markercluster=on
 +
| duplicatemarkers=off
 +
| zoom=2
 +
| searchmarkers=all
 +
| maxzoom=18
 +
| minzoom=1
 +
| limit=500
 +
| format=leaflet
 +
}}
 +
 
 +
{{#ask:
 +
[[Category:Organization_(E)]]
 +
|?Coordinates
 +
| markercluster=on
 +
| duplicatemarkers=off
 +
| zoom=2
 +
| searchmarkers=all
 +
| maxzoom=18
 +
| minzoom=1
 +
| limit=500
 +
| format=leaflet
 +
}}
  
 
=Highlights=
 
=Highlights=
Line 43: Line 123:
 
[[Category:Person_(E)]]  [[-HasProjectDeveloper_(E)::ENIGMA3_Cortical_GWAS]] OR
 
[[Category:Person_(E)]]  [[-HasProjectDeveloper_(E)::ENIGMA3_Cortical_GWAS]] OR
 
[[Category:Person_(E)]]  [[-HasMainPrincipalInvestigator_(E).-HasCohort_(E)::ENIGMA3_Cortical_GWAS]]
 
[[Category:Person_(E)]]  [[-HasMainPrincipalInvestigator_(E).-HasCohort_(E)::ENIGMA3_Cortical_GWAS]]
−
  | ?HasEmail_(E)
+
  | ?HasEmail_(E)=Email
 
  | limit=15
 
  | limit=15
 
  | format=broadtable
 
  | format=broadtable
Line 52: Line 132:
 
This table gives us all the recently contributed datasets.
 
This table gives us all the recently contributed datasets.
  
−
{{#ask: [[Category:Dataset (E)]]  [[-HasDataset_(E)]]
+
{{#ask: [[Category:Dataset (E)]]
−
  | ?Schema:Distribution (E)=Recent Data Downloads
+
  | ?HasDistribution (E)=Data Download
−
| mainlabel=-
+
  | limit=5
−
  | limit=10
 
 
  | format=broadtable
 
  | format=broadtable
 
  | sort=Modification date
 
  | sort=Modification date
Line 75: Line 154:
 
-->
 
-->
  
−
[http://organicdatacuration.org/enigma_dev/index.php/Author_Rules_Documentation Documentation for Generating Author Rules]
+
<gallery mode = "packed-overlay" widths=150px heights=150px>
 +
File:Author.JPG | [[Author_Rules_Documentation | Documentation for Generating Author Rules]]
 +
</gallery>
  
−
==See other ENIGMA Highlights==
+
= Special Focus: ENIGMA's [[SCZ_Landing_Page | Schizophrenia Working Group]] =
 +
Congratulations to [[Van_Erp_Theo_GM | Theo van Erp]], [[Turner_Jessica_A | Jessica Turner]], and the rest of the ENIGMA [[Schizophrenia_WG | Schizophrenia Working Group]] for their acceptance of the [[Schizophrenia_WG | Schizophrenia Cortical Project]] in Biological Psychiatry!
  
−
Find more ENIGMA Highlights [[ENIGMA Highlights |here]].
+
[[File:Schizophrenia.png|center|400px|alt=SZ-WorkingGroup]]
  
−
= Special Focus: ENIGMA's [[SchizophreniaWG | Schizophrenia Working Group]] =
+
== Projects of the [[Schizophrenia_WG | Schizophrenia Working Group]] ==
−
Congratulations to [[Van_Erp_Theo_GM | Theo van Erp]], [[Turner_Jessica_A | Jessica Turner]], and the rest of the ENIGMA [[SchizophreniaWG | Schizophrenia Working Group]] for their acceptance of the [[SchizophreniaWG | Schizophrenia Cortical Project]] in Biological Psychiatry!
 
  
−
== Projects of the [[SchizophreniaWG | Schizophrenia Working Group]] ==
+
The table below summarizes all the projects sponsored by the [[Schizophrenia_WG | Schizophrenia Working Group]]:
  
−
The table below summarizes all the projects sponsored by the [[SchizophreniaWG | Schizophrenia Working Group]]:
+
{{#ask: [[Category:WorkingGroup_(E)]]
−
 
+
  |?HasProject_(E)=Projects
−
{{#ask: [[Category:WorkingGroup_(E)]]  [[FullName_(E)::Schizophrenia]]
 
−
  |?HasProject_(E)
 
−
| limit=50
 
 
  | format=broadtable
 
  | format=broadtable
 +
| limit=6
 
}}
 
}}
  
Line 98: Line 177:
 
This is a demonstration of some information available in this wiki on the Bipolar Working Group.
 
This is a demonstration of some information available in this wiki on the Bipolar Working Group.
  
−
== Cohorts of the [[BD WG | Bipolar Working Group]] ==
+
[[File:BipolarDisorder.png|center|400px|alt=BD-WorkingGroup]]
−
The table below summarizes all the cohorts used in projects of the Bipolar Working Group:
 
−
{{#ask: [[Category:WorkingGroup_(E)]] [[FullName_(E)::Bipolar Disorder]]
 
−
|?hasCohort_(E)
 
−
| limit=15
 
−
| format=broadtable
 
−
}}
 
  
−
==Publication of the [[BD WG | Bipolar Working Group]] ==
+
==See other ENIGMA Highlights==
−
This table summarizes the papers published by the Bipolar Working Group:
 
  
−
{{#ask: [[Category: WorkingGroup_(E)]] [[FullName_(E)::Bipolar Disorder]]
+
Find more ENIGMA Highlights [[ENIGMA Highlights |here]].
−
| ?HasPublishedPaper_(E)
 
−
| limit=15
 
−
| format=table
 
−
}}
 
−
 
 
−
=<b>Before you start</b>: About ODS and the Semantic Media Wiki=
 
−
 
 
−
Anyone can edit this wiki to add information about their own site, their participation in ENIGMA Working Groups, and the status of their work.  Before you can make edits you will be asked to go through a training session for semantic wikis, since this is a special wiki that has semantic annotations and reasoning.  You can also go through the documentation [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here]
 
−
 
 
−
To learn the basics of how wikis work, consult our [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the official [//meta.wikimedia.org/wiki/Help:Contents User's Guide].
 
  
−
Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
+
==Digest==
  
−
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
+
As of July 30, 2020 15:25:25, there are a total of 87 '''datasets''' in the ENIGMA Wiki which belong to 227 '''cohorts'''. There are 549 '''persons''' associated with 508 '''organizations.'''
−
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
 
−
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 
−
* [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
 

Latest revision as of 04:04, 10 June 2022

Welcome to the ENIGMA Organic Data Science wiki!

ENIGMALogo

This is a demonstration prototype for the Organic Data Science wiki for the ENIGMA collaboration.

The site was set up on December 10, 2014.

For any questions or to get an account on this wiki, please contact us at organic.data.science@gmail.com.

Example query to get all Datasets, Project and Cohort

CohortAncestry
CHARGE (Replication)Mixed

Working Groups

Here are some of the Working Groups in the ENIGMA Consortium. There are a total of 53 working groups in the consortium.

The ENIGMA WIKI OVERVIEW TABLES give an overview of all working groups, projects, people, and cohort data available in ENIGMA collaboration.

Before you start: About ODS and the Semantic Media Wiki

Anyone can edit this wiki to add information about their own site, their participation in ENIGMA Working Groups, and the status of their work. Before you can make edits you will be asked to go through a training session for semantic wikis, since this is a special wiki that has semantic annotations and reasoning. You can also go through the documentation here

To learn the basics of how wikis work, consult our Quick Guide to Using a Wiki, or the official User's Guide.

Consult the User's Guide for information on using the wiki software.

Getting Started

Here you can find instructions on contributing to the Wiki, creating your own workflows with WINGS, and testing your hypotheses through DISK.

Organizations

Here are some of the organizations participating in the ENIGMA Project.

 Part OfAffiliate
Academic Center for Child and Adolescent Psychiatry
Alzheimer CenterAmsterdam Neuroscience
Amsterdam AMCAmsterdam UMC University of AmsterdamOlff Miranda
Amsterdam NeuroscienceVU Medical Center
Amsterdam UMC
Amsterdam UMC University of Amsterdam
Amsterdam UMC-AMCAmsterdam UMC-AMCOlff Miranda
Araya Inc.
Athinoula A. Martinos Center for Biomedical ImagingMassachusetts General HospitalGe Tian
Avera Institute for Human GeneticsDavies Gareth E
... further results



Highlights

ENIGMA at SOPB

Chair's Resource Google Drive: [CHAIR'S Resource G-DRIVE]

enigma-chairs-l@mymailinglists.usc.edu

Our first ENIGMA-ODS live demo

Who's part of a project?

The table below summarizes the contributors of the ENIGMA3 Cortical GWAS Project. If your name is not on this list and you have contributed to the ENIGMA3_Cortical_GWAS project, please fill out the required [Google author form https://goo.gl/forms/noprWAM85eznPOqI3]. Please note, ODS is not currently linked to the form, so you will not see updates here immediately.


Recently Contributed Datasets

This table gives us all the recently contributed datasets.

 Data Download
PD CorticalThickDatasetCorticalThick Data Download
PDRoiListROIDownload
PD covariatesCovariatesTestDownload
APOE UKBB over70yrs.csvAPOE UKBB over70yrs.csv
APOEregr ADNI1.csvAPOEregr ADNI1.csv
... further results

Author list generation

Now, see our documentation for formatting an author-list with proper ordering, affiliations, contributions, and acknowledgements.

Special Focus: ENIGMA's Schizophrenia Working Group

Congratulations to Theo van Erp, Jessica Turner, and the rest of the ENIGMA Schizophrenia Working Group for their acceptance of the Schizophrenia Cortical Project in Biological Psychiatry!

SZ-WorkingGroup

Projects of the Schizophrenia Working Group

The table below summarizes all the projects sponsored by the Schizophrenia Working Group:

 Projects
22q WG
ADHD WG
Addiction WG
AdultCross WG
Anxiety WG
Ataxia WG
... further results

The Bipolar Working Group

This is a demonstration of some information available in this wiki on the Bipolar Working Group.

BD-WorkingGroup

See other ENIGMA Highlights

Find more ENIGMA Highlights here.

Digest

As of July 30, 2020 15:25:25, there are a total of 87 datasets in the ENIGMA Wiki which belong to 227 cohorts. There are 549 persons associated with 508 organizations.

Retrieved from "https://organicdatacuration.org/enigma_dev/index.php?title=Main_Page&oldid=50220"