Difference between revisions of "ENIGMA Wiki Demonstration"

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(Additional Tables Capturing ENIGMA Data)
 
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''This demonstration outlines the proper practice for uploading patient/study metadata to this wiki and how this information can be used to generate author lists and additional data tables.''
 
''This demonstration outlines the proper practice for uploading patient/study metadata to this wiki and how this information can be used to generate author lists and additional data tables.''
  
===Workflow for CSV Data Uploads===
+
==Workflow for CSV Data Uploads==
 
#Fill out existing CSV file templates for patient/study metadata
 
#Fill out existing CSV file templates for patient/study metadata
 
#* Leaving values as empty is fine, those cells will just be ignored
 
#* Leaving values as empty is fine, those cells will just be ignored
Line 7: Line 7:
 
#Upload validated CSV files [http://organicdatacuration.org/enigma_dev/index.php/Special:CSVImport here]
 
#Upload validated CSV files [http://organicdatacuration.org/enigma_dev/index.php/Special:CSVImport here]
  
===Author List Generation: Using the ENIGMA3 Cortical GWAS Project===
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==Author List Generation: Using the ENIGMA3 Cortical GWAS Project==
 
* View this project's page in the wiki [http://organicdatacuration.org/enigma_dev/index.php/ENIGMA3_Cortical_GWAS here]
 
* View this project's page in the wiki [http://organicdatacuration.org/enigma_dev/index.php/ENIGMA3_Cortical_GWAS here]
 
* Modify the format of the author list [http://organicdatacuration.org/enigma_dev/index.php/AuthorRules:ENIGMA3_Cortical_GWAS here]
 
* Modify the format of the author list [http://organicdatacuration.org/enigma_dev/index.php/AuthorRules:ENIGMA3_Cortical_GWAS here]
 
* View the generated author list [http://organicdatacuration.org/enigma_dev/index.php/Special:authorGeneration?project=ENIGMA3_Cortical_GWAS here] <br/>
 
* View the generated author list [http://organicdatacuration.org/enigma_dev/index.php/Special:authorGeneration?project=ENIGMA3_Cortical_GWAS here] <br/>
  
===Additional Tables Capturing ENIGMA Data===
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==Additional Tables Capturing ENIGMA Data==
 +
''Tables generated using MediaWiki's inline query functionality'' <br />
 
<b>[[ENIGMA_WIKI_OVERVIEW_TABLES]]</b>
 
<b>[[ENIGMA_WIKI_OVERVIEW_TABLES]]</b>
  
===Further Information on ENIGMA Ontology===
+
==Further Information on ENIGMA Ontology==
 
The following contains detailed the documentation of all classes, properties, data properties and individuals present in the different modules of the ENIGMA ontology: <br/>
 
The following contains detailed the documentation of all classes, properties, data properties and individuals present in the different modules of the ENIGMA ontology: <br/>
 
[https://knowledgecaptureanddiscovery.github.io/EnigmaOntology/release/index.html Ontology Documentation]
 
[https://knowledgecaptureanddiscovery.github.io/EnigmaOntology/release/index.html Ontology Documentation]

Latest revision as of 23:42, 27 April 2018

This demonstration outlines the proper practice for uploading patient/study metadata to this wiki and how this information can be used to generate author lists and additional data tables.

Workflow for CSV Data Uploads

  1. Fill out existing CSV file templates for patient/study metadata
    • Leaving values as empty is fine, those cells will just be ignored
    • To add multiple values in a single cell separate each value by a semicolon (i.e. Cohort1;Cohort2)
  2. Upload validated CSV files here

Author List Generation: Using the ENIGMA3 Cortical GWAS Project

  • View this project's page in the wiki here
  • Modify the format of the author list here
  • View the generated author list here

Additional Tables Capturing ENIGMA Data

Tables generated using MediaWiki's inline query functionality
ENIGMA_WIKI_OVERVIEW_TABLES

Further Information on ENIGMA Ontology

The following contains detailed the documentation of all classes, properties, data properties and individuals present in the different modules of the ENIGMA ontology:
Ontology Documentation